miRBase entry: cli-mir-1306

Stem-loop cli-mir-1306

Accession

MI0030062

Description

Columba livia cli-mir-1306 precursor miRNA

Sequence

cagccuccaCCACCUCCCCUGCAAACGUCCagugacgcagagguaauggACGUUGGCUCUGGUGGUGAUGgacag
...((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....

Structure

-cag  uc       UCCCCU  A        gug  gc 
    cc  caCCACC      GC AACGUCCa   ac  a
    ||  |||||||      || ||||||||   ||   
    gG  GUGGUGG      CG UUGCAggu   ug  g
gaca  UA       ---UCU  G        -aa  ga

Annotation confidence Not enough data

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Genome context

KB375297.1: 625480-625554 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-1306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-1306-5p

Accession	MIMAT0038670
Description	Columba livia cli-miR-1306-5p mature miRNA
Sequence	10 - CCACCUCCCCUGCAAACGUCC - 30
Evidence	experimental Illumina [1]

Mature cli-miR-1306-3p

Accession	MIMAT0038671
Description	Columba livia cli-miR-1306-3p mature miRNA
Sequence	50 - ACGUUGGCUCUGGUGGUGAUG - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196