Stem-loop cli-mir-1677

Accession

MI0030074

Description

Columba livia cli-mir-1677 precursor miRNA

Sequence

12588 reads, 62.0 reads per million, 23 experiments

cuguguugcuuagggucugaUCCUGCACCGCUGAAGUCAAUggaaguuuugucaUUGACUUCAAUAGGAGCAGGAUUUGaaccuuaugcucuau
.......((.(((((((.((((((((.((..((((((((((((........))))))))))))...)).)))))))).).)))))).)).....

Structure

cuguguu  u      - u        A  -GC            aag 
       gc uagggu c gaUCCUGC CC   UGAAGUCAAUgg   u
       || |||||| | |||||||| ||   ||||||||||||    
       cg auucca G UUAGGACG GG   ACUUCAGUUacu   u
--uaucu  u      a U        A  AUA            guu 

Annotation confidence High

Genome context

3: 72716276-72716369 [+]

Mature cli-miR-1677-5p

• Accession: MIMAT0038691
• Description: Columba livia cli-miR-1677-5p mature miRNA
• Sequence: 21 - UCCUGCACCGCUGAAGUCAAU - 41
• Evidence: experimental ; Illumina [1]

Mature cli-miR-1677-3p

• Accession: MIMAT0038692
• Description: Columba livia cli-miR-1677-3p mature miRNA
• Sequence: 55 - UUGACUUCAAUAGGAGCAGGAUUUG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196