Stem-loop cli-mir-1720

Accession

MI0030075

Description

Columba livia cli-mir-1720 precursor miRNA

Sequence

cugcacuucUGACCACCUCAGCCGUUGCUUUUGugagccucgagagcGAAGCAACGAGAGGCUGGUCUGAaacccccuc
......(((.(((((((((...(((((((((.((...........))))))))))).)))).))))).)))........

Structure

--cugcac   U     -    AGC         U  gagc 
        uuc GACCA CCUC   CGUUGCUUU Gu    c
        ||| ||||| ||||   ||||||||| ||    u
        aAG CUGGU GGAG   GCAACGAAG cg    c
cuccccca   U     C    --A         -  agag 

Annotation confidence Not enough data

Genome context

KB375424.1: 999045-999123 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-1720

Mature cli-miR-1720-5p

• Accession: MIMAT0038693
• Description: Columba livia cli-miR-1720-5p mature miRNA
• Sequence: 10 - UGACCACCUCAGCCGUUGCUUUUG - 33
• Evidence: experimental ; Illumina [1]

Mature cli-miR-1720-3p

• Accession: MIMAT0038694
• Description: Columba livia cli-miR-1720-3p mature miRNA
• Sequence: 48 - GAAGCAACGAGAGGCUGGUCUGA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196