miRBase entry: cli-mir-1729

Stem-loop cli-mir-1729


Accession
MI0030076
Description
Columba livia cli-mir-1729 precursor miRNA


Sequence

3435 reads, 23.0 reads per million, 28 experiments
uagacaggccugauccugcAUCCCUUACUCACGUGAGCAGUCgucucuauuucacgggaCUACUCGGUGAGUAAGGAUCGCaggacugggaccacuacc
......((((((.((((((((((.((((((((.((((.((((...............)))).)))))))))))))))).)))))).)))).))......

Structure
uagaca  -    a      -    C        G    C    gucucu 
      gg ccug uccugc AUCC UUACUCAC UGAG AGUC      a
      || |||| |||||| |||| |||||||| |||| ||||      u
      cc gggu aggaCG UAGG AAUGAGUG GCUC UCag      u
ccauca  a    c      C    -        -    A    ggcacu 


Annotation confidence High
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Genome context
15: 934012-934110 [+]

Database links

Mature cli-miR-1729-5p

Accession MIMAT0038695
Description Columba livia cli-miR-1729-5p mature miRNA
Sequence 20 - AUCCCUUACUCACGUGAGCAGUC - 42
Evidence experimental
Illumina [1]

Mature cli-miR-1729-3p

Accession MIMAT0038696
Description Columba livia cli-miR-1729-3p mature miRNA
Sequence 60 - CUACUCGGUGAGUAAGGAUCGC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196