Stem-loop cli-mir-1788

Accession

MI0030080

Description

Columba livia cli-mir-1788 precursor miRNA

Sequence

156 reads, 14.0 reads per million, 22 experiments

cugucuccggGGCUUGUUUUCCGUUGCCUGCGguuuguuccagugacuCAGGCAGCGAAAGCAAGUCUGggaggcug
..((((((.((((((((((((.((((((((.((((.........)))))))))))))))))))))))).))))))..

Structure

cu      g            C        C    ugu 
  gucucc gGGCUUGUUUUC GUUGCCUG Gguu   u
  |||||| |||||||||||| |||||||| ||||   c
  cggagg UCUGAACGAAAG CGACGGAC ucag   c
gu      G            -        -    uga 

Annotation confidence High

Genome context

6: 20003762-20003838 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-1788

Mature cli-miR-1788-5p

• Accession: MIMAT0038700
• Description: Columba livia cli-miR-1788-5p mature miRNA
• Sequence: 11 - GGCUUGUUUUCCGUUGCCUGCG - 32
• Evidence: experimental ; Illumina [1]

Mature cli-miR-1788-3p

• Accession: MIMAT0038701
• Description: Columba livia cli-miR-1788-3p mature miRNA
• Sequence: 49 - CAGGCAGCGAAAGCAAGUCUG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196