Stem-loop cli-mir-2188

Accession

MI0030086

Description

Columba livia cli-mir-2188 precursor miRNA

Sequence

117189 reads, 1313.0 reads per million, 30 experiments

cagaccugugggaAAGGUCCAACCUCACAUGUCCUguauagaauaaagagggAUAUAUGUGGUCAGACCUAUCccacaggccc
....(((((((((.(((((..(((.((.(((((((..............))))))).)).)))..))))).)))))))))...

Structure

caga         A     CA   U  C       guauag 
    ccuguggga AGGUC  ACC CA AUGUCCU      a
    ||||||||| |||||  ||| || |||||||       
    ggacaccCU UCCAG  UGG GU UAUAggg      a
-ccc         A     AC   U  A       agaaau 

Annotation confidence High

Genome context

22: 3794194-3794276 [-]

Mature cli-miR-2188-5p

• Accession: MIMAT0038709
• Description: Columba livia cli-miR-2188-5p mature miRNA
• Sequence: 14 - AAGGUCCAACCUCACAUGUCCU - 35
• Evidence: experimental ; Illumina [1]

Mature cli-miR-2188-3p

• Accession: MIMAT0038710
• Description: Columba livia cli-miR-2188-3p mature miRNA
• Sequence: 53 - AUAUAUGUGGUCAGACCUAUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196