Stem-loop cli-mir-9628

Accession

MI0030107

Description

Columba livia cli-mir-9628 precursor miRNA

Sequence

242 reads, 26.0 reads per million, 23 experiments

uguuccuucacucauggcugCACAGUCUGGCAGGGCUUGCAGaggccacagagaacuacCUGGAGGCUUUGCCAGCCUGGGccgccugcggugguggcaa
....((.(((((((.(((.((.(((.((((((((((((.(((((..(.....)..))..))).)))))))))))).))).)).))))).))))).))...

Structure

uguu  u     -  u   u  A   U            G   --  gc a 
    cc ucacu ca ggc gC CAG CUGGCAGGGCUU CAG  ag  c c
    || ||||| || ||| || ||| |||||||||||| |||  ||  | a
    gg ggugg gu ccg cG GUC GACCGUUUCGGA GUC  uc  g g
-aac  u     c  -   c  G   C            G   ca  aa a 

Annotation confidence High

Genome context

1: 81678668-81678767 [+]

Mature cli-miR-9628-5p

• Accession: MIMAT0038747
• Description: Columba livia cli-miR-9628-5p mature miRNA
• Sequence: 21 - CACAGUCUGGCAGGGCUUGCAG - 42
• Evidence: experimental ; Illumina [1]

Mature cli-miR-9628-3p

• Accession: MIMAT0038748
• Description: Columba livia cli-miR-9628-3p mature miRNA
• Sequence: 60 - CUGGAGGCUUUGCCAGCCUGGG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196