miRBase entry: cli-mir-9639

Stem-loop cli-mir-9639


Accession
MI0030119
Description
Columba livia cli-mir-9639 precursor miRNA


Sequence

123 reads, 1.0 reads per million, 20 experiments
ucuccggggcgguggaAGGAGCCGGUAGCUGUGCAGCCcgcuguccgacagCGCUGCUGAGCUCACGGCACCgaccaccgugcgcggccu
...((((.(((((((..((.((((..((((..(((((..(((((...))))))))))..))))..)))).))..))))))).).)))...

Structure
ucu   - g       aA  A    GU    GU     Cc     c 
   ccg g gcggugg  GG GCCG  AGCU  GCAGC  gcugu  
   ||| | |||||||  || ||||  ||||  |||||  ||||| c
   ggc c ugccacc  CC CGGC  UCGA  CGUCG  Cgaca  
ucc   g g       ag  A    AC    GU     --     g 


Annotation confidence Medium
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Genome context
2: 24427855-24427944 [-]

Database links

Mature cli-miR-9639-5p

Accession MIMAT0038771
Description Columba livia cli-miR-9639-5p mature miRNA
Sequence 17 - AGGAGCCGGUAGCUGUGCAGCC - 38
Evidence experimental
Illumina [1]

Mature cli-miR-9639-3p

Accession MIMAT0038772
Description Columba livia cli-miR-9639-3p mature miRNA
Sequence 52 - CGCUGCUGAGCUCACGGCACC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196