miRBase entry: cli-mir-9640

Stem-loop cli-mir-9640


Accession
MI0030120
Description
Columba livia cli-mir-9640 precursor miRNA


Sequence

413 reads, 10.0 reads per million, 27 experiments
cacgggcggcaGAGCCUCGCGCUGACUCUGAAGguucugguaacucgacuUCAGAUGGCAGAGCUGAGGCUgcgccgcucgcu
..((((((((..((((((((.(((.((((((((...............))))))).).))).)).))))))..))))))))..

Structure
ca        aG      -  G   A -       guucug 
  cgggcggc  AGCCUC GC CUG C UCUGAAG      g
  ||||||||  |||||| || ||| | |||||||      u
  gcucgccg  UCGGAG CG GAC G AGACUuc      a
uc        cg      U  A   G U       agcuca 


Annotation confidence Medium
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Genome context
23: 1570007-1570089 [+]

Database links

Mature cli-miR-9640-5p

Accession MIMAT0038773
Description Columba livia cli-miR-9640-5p mature miRNA
Sequence 12 - GAGCCUCGCGCUGACUCUGAAG - 33
Evidence experimental
Illumina [1]

Mature cli-miR-9640-3p

Accession MIMAT0038774
Description Columba livia cli-miR-9640-3p mature miRNA
Sequence 51 - UCAGAUGGCAGAGCUGAGGCU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196