Stem-loop cli-mir-9644

Accession

MI0030124

Description

Columba livia cli-mir-9644 precursor miRNA

Sequence

2348 reads, 26.0 reads per million, 10 experiments

uugcccagaggUGGUGUGGGGUUUGGAUCUCAGUuaaaaucucacuGGAGACCAUACUGCACAGCCUUCucuagguga
(((((.(((((.((((((.(((.(((.(((((((.........))).))))))).))).)))).)).))))).)))))

Structure

     c     U  -    G   U   A    -   uaa 
uugcc agagg GG UGUG GGU UGG UCUC AGU   a
||||| ||||| || |||| ||| ||| |||| |||   a
agugg ucuCU CC ACAC UCA ACC AGAG uca   u
     a     U  G    G   U   -    G   cuc 

Annotation confidence High

Genome context

1: 122882117-122882194 [+]

Mature cli-miR-9644-5p

• Accession: MIMAT0038781
• Description: Columba livia cli-miR-9644-5p mature miRNA
• Sequence: 12 - UGGUGUGGGGUUUGGAUCUCAGU - 34
• Evidence: experimental ; Illumina [1]

Mature cli-miR-9644-3p

• Accession: MIMAT0038782
• Description: Columba livia cli-miR-9644-3p mature miRNA
• Sequence: 47 - GGAGACCAUACUGCACAGCCUUC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196