miRBase entry: pbv-mir-15b

Stem-loop pbv-mir-15b

Accession

MI0030157

Description

Python bivittatus pbv-mir-15b precursor miRNA

Sequence

ccuugagguggcgUAGCAGCACGACAUGGUUUGUAgagaaaagaagauaCAGACCGUUCUGGGCUGCCUCAugaccucaagg
(((((((((.(.(..(((((.((..((((((((((............))))))))))..)).)))))..).).)))))))))

Structure

         g c UA     A  AC          gagaa 
ccuugaggu g g  GCAGC CG  AUGGUUUGUA     a
||||||||| | |  ||||| ||  ||||||||||      
ggaacucca u C  CGUCG GU  UGCCAGACau     a
         g A UC     G  CU          agaag

Annotation confidence Not enough data

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Genome context

KE958055.1: 57363-57444 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-15b-5p

Accession	MIMAT0038831
Description	Python bivittatus pbv-miR-15b-5p mature miRNA
Sequence	14 - UAGCAGCACGACAUGGUUUGUA - 35
Evidence	experimental Illumina [1]

Mature pbv-miR-15b-3p

Accession	MIMAT0038832
Description	Python bivittatus pbv-miR-15b-3p mature miRNA
Sequence	50 - CAGACCGUUCUGGGCUGCCUCA - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196