miRBase entry: pbv-mir-17

Stem-loop pbv-mir-17

Accession

MI0030161

Description

Python bivittatus pbv-mir-17 precursor miRNA

Sequence

uguuagaauaauguCAAAGUGCUUACAGUGCAGGUAgugauuuauagaaccuACUGCAGUGAAGGCACUUGUAGCauuaugcuggca
((((((.(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))))).))))))

Structure

      a       -CA        A  G     GUA  gauu 
uguuag auaaugu   AAGUGCUU CA UGCAG   gu    u
|||||| |||||||   |||||||| || |||||   ||     
acgguc uauuaCG   UUCACGGA GU ACGUC   ca    a
      g       AUG        A  G     Auc  agau

Annotation confidence Not enough data

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Genome context

KE958468.1: 78131-78217 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pbv-mir-17

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-17-5p

Accession	MIMAT0038838
Description	Python bivittatus pbv-miR-17-5p mature miRNA
Sequence	15 - CAAAGUGCUUACAGUGCAGGUA - 36
Evidence	experimental Illumina [1]

Mature pbv-miR-17-3p

Accession	MIMAT0038839
Description	Python bivittatus pbv-miR-17-3p mature miRNA
Sequence	53 - ACUGCAGUGAAGGCACUUGUAGC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196