miRBase entry: pbv-mir-19b

Stem-loop pbv-mir-19b

Accession

MI0030165

Description

Python bivittatus pbv-mir-19b precursor miRNA

Sequence

cuguucucugguuaguuuugcagguuugcauccagcuguaugauacucugcUGUGCAAAUCCAUGCAAAACUGacuguggcagu
(((((...((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))).))))).

Structure

-     cuc              -  -      uc    uguau 
 cuguu   ugguuaguuuugca gg uuugca  cagc     g
 |||||   |||||||||||||| || ||||||  ||||     a
 gacgg   gucaGUCAAAACGU CC AAACGU  GUcg     u
u     --u              A  U      --    ucuca

Annotation confidence Not enough data

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Genome context

KE958468.1: 77568-77651 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pbv-mir-19b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-19b-3p

Accession	MIMAT0038845
Description	Python bivittatus pbv-miR-19b-3p mature miRNA
Sequence	52 - UGUGCAAAUCCAUGCAAAACUG - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196