miRBase entry: pbv-mir-20b

Stem-loop pbv-mir-20b

Accession

MI0030167

Description

Python bivittatus pbv-mir-20b precursor miRNA

Sequence

guuuguccuggcagugcCAAAGUGCUCAUAGUGCAGGUAGuuguggacccaaauucuACUGUAAUGUGGGCACUUCCAGUccugcuggauccug
....((((.(((((.((..(((((((((((.(((((.(((...((....))....)))))))).)))))))))))...)).)))))))))....

Structure

guuu    u     u  -CA           G     G   -uug  g 
    gucc ggcag gc   AAGUGCUCAUA UGCAG UAG    ug a
    |||| ||||| ||   ||||||||||| ||||| |||    ||  
    uagg ucguc UG   UUCACGGGUGU AUGUC Auc    ac c
gucc    -     c  ACC           A     -   uuaa  c

Annotation confidence Not enough data

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Genome context

KE958055.1: 586-679 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from pbv-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-20b-5p

Accession	MIMAT0038847
Description	Python bivittatus pbv-miR-20b-5p mature miRNA
Sequence	18 - CAAAGUGCUCAUAGUGCAGGUAG - 40
Evidence	experimental Illumina [1]

Mature pbv-miR-20b-3p

Accession	MIMAT0038848
Description	Python bivittatus pbv-miR-20b-3p mature miRNA
Sequence	58 - ACUGUAAUGUGGGCACUUCCAGU - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196