Stem-loop pbv-mir-21

Accession

MI0030168

Description

Python bivittatus pbv-mir-21 precursor miRNA

Sequence

uaccuuucugucggaUAGCUUAUCAGACUGAUGUUGACuguuggaugucauggCAACAACAGUCGGUAGGCUGUCugacauuuugguauc
((((....((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))....))))..

Structure

--    uuuc                A     A     A    ugg 
  uacc    ugucggaUAGCUUAUC GACUG UGUUG Cugu   a
  ||||    |||||||||||||||| ||||| ||||| ||||    
  augg    acaguCUGUCGGAUGG CUGAC ACAAC ggua   u
cu    uuuu                -     A     -    cug 

Annotation confidence Not enough data

Genome context

KE953887.1: 87749-87838 [-]

Mature pbv-miR-21-5p

• Accession: MIMAT0038849
• Description: Python bivittatus pbv-miR-21-5p mature miRNA
• Sequence: 16 - UAGCUUAUCAGACUGAUGUUGAC - 38
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-21-3p

• Accession: MIMAT0038850
• Description: Python bivittatus pbv-miR-21-3p mature miRNA
• Sequence: 54 - CAACAACAGUCGGUAGGCUGUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196