miRBase entry: pbv-mir-29a-2

Stem-loop pbv-mir-29a-2

Accession

MI0030180

Description

Python bivittatus pbv-mir-29a-2 precursor miRNA

Sequence

acacaggcugACCGAUUUCUCUUGGUGUUCAGagucuuaguuuuuguCUAGCACCAUUUGAAAUCGGUuaugauguagggggaaaagc
..(((...(((((((((((...(((((((.(((.............))))))))))...)))))))))))...)))............

Structure

----------ac   ggc           UCU       C   gucuu 
            aca   ugACCGAUUUC   UGGUGUU AGa     a
            |||   |||||||||||   ||||||| |||     g
            ugu   auUGGCUAAAG   ACCACGA UCu     u
cgaaaaggggga   agu           UUU       -   guuuu

Annotation confidence Not enough data

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Genome context

KE953855.1: 172389-172476 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-29a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-29a-3p

Accession	MIMAT0038866
Description	Python bivittatus pbv-miR-29a-3p mature miRNA
Sequence	48 - CUAGCACCAUUUGAAAUCGGU - 68
Evidence	experimental Illumina [1]

Mature pbv-miR-29a-2-5p

Accession	MIMAT0038867
Description	Python bivittatus pbv-miR-29a-2-5p mature miRNA
Sequence	11 - ACCGAUUUCUCUUGGUGUUCAG - 32
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196