miRBase entry: pbv-mir-125a

Stem-loop pbv-mir-125a

Accession

MI0030215

Description

Python bivittatus pbv-mir-125a precursor miRNA

Sequence

ggcaucuucucugUCCCUGAGACCCUUAACCUGUGAggaagcccagaggucacaggugagggccuugggaacugagugg
.....((.(((.((.((((((.((((((.(((((((((....)).....))))))))))))).)))))).)).))).))

Structure

ggcau  u   u  C      A      A       -----  a 
     cu cuc gU CCUGAG CCCUUA CCUGUGA     gg a
     || ||| || |||||| |||||| |||||||     ||  
     gg gag ca ggguuc gggagu ggacacu     cc g
-----  u   u  a      c      -       ggaga  c

Annotation confidence Not enough data

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Genome context

KE959282.1: 18897-18975 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-125a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-125a-5p

Accession	MIMAT0038915
Description	Python bivittatus pbv-miR-125a-5p mature miRNA
Sequence	14 - UCCCUGAGACCCUUAACCUGUGA - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196