miRBase entry: pbv-mir-183

Stem-loop pbv-mir-183

Accession

MI0030260

Description

Python bivittatus pbv-mir-183 precursor miRNA

Sequence

uccuguucugugUAUGGCACUGGUAGAAUUCACUGugaaaacacucgaucagugaauuaccaacgggccauaaacggagcagagaaagaacc
(((((((((((.((((((.(((....((((((((((((......)))..))))))))).....))))))))).))))))))).)).......

Structure

-------  -         g      A   -GUAG         --   aa 
       uc cuguucugu UAUGGC CUG     AAUUCACUG  uga  a
       || ||||||||| |||||| |||     |||||||||  |||   
       ag gacgaggca auaccg ggc     uuaagugac  gcu  c
ccaagaa  a         a      -   aacca         ua   ca

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KE958924.1: 50043-50134 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-183

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-183-5p

Accession	MIMAT0038982
Description	Python bivittatus pbv-miR-183-5p mature miRNA
Sequence	13 - UAUGGCACUGGUAGAAUUCACUG - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196