miRBase entry: pbv-mir-221

Stem-loop pbv-mir-221

Accession

MI0030296

Description

Python bivittatus pbv-mir-221 precursor miRNA

Sequence

auccagccuuugggccuugACCUGGCAUACAAUGUAGAAUACuguguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUcaggcugucugga
.(((((......(((((.(((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))..)))))..)))))

Structure

a     ccuuug     -u         U         AAUA    -    g 
 uccag      ggccu  gACCUGGCA ACAAUGUAG    Cugu guuu  
 |||||      |||||  ||||||||| |||||||||    |||| |||| u
 agguc      ucgga  UUGGGUCGU UGUUACAUC    GAca cgaa  
-     ----ug     cU         C         ----    a    u

Annotation confidence Not enough data

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Genome context

KE954435.1: 198726-198819 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-221-5p

Accession	MIMAT0039031
Description	Python bivittatus pbv-miR-221-5p mature miRNA
Sequence	20 - ACCUGGCAUACAAUGUAGAAUAC - 42
Evidence	experimental Illumina [1]

Mature pbv-miR-221-3p

Accession	MIMAT0039032
Description	Python bivittatus pbv-miR-221-3p mature miRNA
Sequence	60 - AGCUACAUUGUCUGCUGGGUUU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196