miRBase entry: pbv-mir-222a

Stem-loop pbv-mir-222a

Accession

MI0030297

Description

Python bivittatus pbv-mir-222a precursor miRNA

Sequence

agcugcucaucaguCGCUCAGUAGUCAGUGUAGAUUCuguuucuucggucagcAGCUACAUCUGGCUACUGGGUCUCugaagacgucuug
....((((.((((..((((((((((((((((((...(((((.(....)..)))))))))).)))))))))))))..)))).)).))....

Structure

agcu  -  a    uC             -     AUU     -u u 
    gc uc ucag  GCUCAGUAGUCAG UGUAG   Cuguu  c u
    || || ||||  ||||||||||||| |||||   |||||  |  
    ug ag aguC  UGGGUCAUCGGUC ACAUC   GAcga  g c
guuc  c  a    UC             U     ---     cu g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KE954435.1: 197477-197566 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-222a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-222a-5p

Accession	MIMAT0039033
Description	Python bivittatus pbv-miR-222a-5p mature miRNA
Sequence	15 - CGCUCAGUAGUCAGUGUAGAUUC - 37
Evidence	experimental Illumina [1]

Mature pbv-miR-222a-3p

Accession	MIMAT0039034
Description	Python bivittatus pbv-miR-222a-3p mature miRNA
Sequence	54 - AGCUACAUCUGGCUACUGGGUCUC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196