miRBase entry: pbv-mir-449a

Stem-loop pbv-mir-449a

Accession

MI0030310

Description

Python bivittatus pbv-mir-449a precursor miRNA

Sequence

guguguaguggaaUGGCAGUGUAUUGUUAGCUGGAuggauauccaaauggcaccagcugacauucagcugccagccuacggcacaua
((((((.((((..(((((((....((((((((((.((.............))))))))))))....)))))))..)))).)))))).

Structure

-      a    aa       GUAU          A  gauau 
 gugugu gugg  UGGCAGU    UGUUAGCUGG ug     c
 |||||| ||||  |||||||    |||||||||| ||     c
 uacacg cauc  accgucg    acagucgacc ac     a
a      g    cg       acuu          -  gguaa

Annotation confidence Not enough data

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Genome context

KE953060.1: 285879-285965 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pbv-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-449a-5p

Accession	MIMAT0039051
Description	Python bivittatus pbv-miR-449a-5p mature miRNA
Sequence	14 - UGGCAGUGUAUUGUUAGCUGGA - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196