Stem-loop pbv-mir-1397

Accession

MI0030329

Description

Python bivittatus pbv-mir-1397 precursor miRNA

Sequence

agugcgaugugugcauUGCAUUGCGACGGGUUACAUCacuggucauaacaugAUGUAACCCAACGCAGCAUGAuguaagcaucgugau
...(((((((.((((((...(((((..(((((((((((.((.......)))))))))))))..)))))...)))))).)))))))...

Structure

agu       g      GCA     AC           c  gu 
   gcgaugu ugcauU   UUGCG  GGGUUACAUCa ug  c
   ||||||| ||||||   |||||  ||||||||||| ||  a
   ugcuacg auguAG   GACGC  CCCAAUGUAgu ac  u
uag       a      UAC     AA           -  aa 

Annotation confidence Not enough data

Genome context

KE957594.1: 57702-57789 [-]

Mature pbv-miR-1397-5p

• Accession: MIMAT0039079
• Description: Python bivittatus pbv-miR-1397-5p mature miRNA
• Sequence: 17 - UGCAUUGCGACGGGUUACAUC - 37
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-1397-3p

• Accession: MIMAT0039080
• Description: Python bivittatus pbv-miR-1397-3p mature miRNA
• Sequence: 53 - AUGUAACCCAACGCAGCAUGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196