Stem-loop pbv-mir-2188

Accession

MI0030335

Description

Python bivittatus pbv-mir-2188 precursor miRNA

Sequence

ucacacuuguggucAAGGUCCAACCUCAUGUGUCCUguaugcaaugaaaguggGAUGCAUGUGGUCAGACCUAGAccacaaggccagugg
.(((.(((((((((.(((((..(((.((((((((((...............)))))))))).)))..))))).)))))))))....))).

Structure

u   ---a         A     CA   U          guaugc 
 cac    cuugugguc AGGUC  ACC CAUGUGUCCU      a
 |||    ||||||||| |||||  ||| ||||||||||      a
 gug    gaacaccAG UCCAG  UGG GUACGUAGgg      u
g   accg         A     AC   U          ugaaag 

Annotation confidence Not enough data

Genome context

KE955095.1: 150217-150306 [-]

Mature pbv-miR-2188-5p

• Accession: MIMAT0039089
• Description: Python bivittatus pbv-miR-2188-5p mature miRNA
• Sequence: 15 - AAGGUCCAACCUCAUGUGUCCU - 36
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-2188-3p

• Accession: MIMAT0039090
• Description: Python bivittatus pbv-miR-2188-3p mature miRNA
• Sequence: 54 - GAUGCAUGUGGUCAGACCUAGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196