Stem-loop pbv-mir-2970

Accession

MI0030336

Description

Python bivittatus pbv-mir-2970 precursor miRNA

Sequence

caucuucugccacugcUGACAGUCAGUAGUUGGUCUGGGguaagcaggaaaucuCAGAUCAUCUCUUGACUGUGGAugguguaggggaa
..((((((((.((((.(.((((((((.((.(((((((((((.........))))))))))).)).)))))))).).)))))))))))).

Structure

ca        c    c G        U  U           aag 
  ucuucugc acug U ACAGUCAG AG UGGUCUGGGgu   c
  |||||||| |||| | |||||||| || |||||||||||   a
  aggggaug uggu G UGUCAGUU UC ACUAGACucua   g
-a        -    A G        C  U           aag 

Annotation confidence Not enough data

Genome context

KE954653.1: 225924-226012 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-2970

Mature pbv-miR-2970-5p

• Accession: MIMAT0039091
• Description: Python bivittatus pbv-miR-2970-5p mature miRNA
• Sequence: 17 - UGACAGUCAGUAGUUGGUCUGGG - 39
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-2970-3p

• Accession: MIMAT0039092
• Description: Python bivittatus pbv-miR-2970-3p mature miRNA
• Sequence: 55 - CAGAUCAUCUCUUGACUGUGGA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196