Stem-loop rno-mir-1247

Accession

MI0030348

Description

Rattus norvegicus rno-mir-1247 precursor miRNA

Sequence

6051 reads, 6 reads per million, 389 experiments

cggccgccgggcgcACCCGUCCCGUUCGUCCCCGGAcguugcucucugcccCGGGAACGUCGAGACUGGAGCgcccgaacug
.......(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).))))))).....

Structure

cggccgc       A  C   C  UU   C     Ac  ugc 
       cgggcgc CC GUC CG  CGU CCCGG  gu   u
       ||||||| || ||| ||  ||| |||||  ||    
       gcccgCG GG CAG GC  GCA GGGCc  cg   c
--gucaa       A  U   A  -U   A     -c  ucu 

Annotation confidence High

Genome context

chr6: 134626097-134626178 [-]

Mature rno-miR-1247-5p

• Accession: MIMAT0035721
• Description: Rattus norvegicus rno-miR-1247-5p mature miRNA
• Sequence: 15 - ACCCGUCCCGUUCGUCCCCGGA - 36
• Evidence: experimental ; RNAseq-metaanalysis [1]

Mature rno-miR-1247-3p

• Accession: MIMAT0035722
• Description: Rattus norvegicus rno-miR-1247-3p mature miRNA
• Sequence: 52 - CGGGAACGUCGAGACUGGAGC - 72
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379