miRBase entry: bra-MIR156f

Stem-loop bra-MIR156f


Accession
MI0030552
Description
Brassica rapa bra-MIR156f precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
16 open access papers mention bra-MIR156f
(149 sentences)

Sequence

uugugagugaaugagcuggggcaaaagaaacacacagaaacUGACAGAAGAGAGUGAGCACacaaaaguaaauugcauauguugcauuugcuucucuugcgUGCUCACUGCUCUUUCUGUCAGAuucccgugcugaucucuuuggccuguccuuguuccucuuugucucagucucuc
....(((.(((((((...((((.(((((..(((((.(((.(((((((((((((((((((((.(((((((((((.(((.....)))))))))))...))).))))))))).))).))))))))).)))..))).))...))))).))))...))))))))))................

Structure
------------uugu   u       cug    a     -aa  -   -a   a         -   -         a   ---        u   u 
                gag gaaugag   gggc aaaga   ca cac  gaa cUGACAGAA GAG AGUGAGCAC caa   aaguaaau gca a
                ||| |||||||   |||| |||||   || |||  ||| ||||||||| ||| ||||||||| |||   |||||||| ||| u
                cuc cuuguuc   uccg uuucu   gu gug  cuu GACUGUCUU CUC UCACUCGUg guu   uucguuua cgu g
cucucugacucuguuu   -       cug    g     cua  c   cc   A         U   G         c   cuc        -   u 


Annotation confidence Not enough data
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Genome context
chrA9: 31078747-31078923 [+]

Database links

Mature bra-miR156f-5p

Accession MIMAT0035826
Description Brassica rapa bra-miR156f-5p mature miRNA
Sequence 42 - UGACAGAAGAGAGUGAGCAC - 61
Evidence experimental
Illumina [1]

Mature bra-miR156f-3p

Accession MIMAT0035827
Description Brassica rapa bra-miR156f-3p mature miRNA
Sequence 102 - UGCUCACUGCUCUUUCUGUCAGA - 124
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146