Stem-loop bra-MIR319

Accession

MI0030558

Description

Brassica rapa bra-MIR319 precursor miRNA

Literature search

9 open access papers mention bra-MIR319
(31 sentences)

Sequence

uuguagggauauauaucgagggAGAGCUUCCUUGAGUCCAUUCagaggcugugauaugauccaauuaguuuccgacucauccauccaaauaccgaguuacuaaauuuuaagauagacucguuaaaugaaugaaugaugcgguagacaaauuggaacauugauucucuuuggUUGGACUGAAGGGAGCUCCCUcucucuu
.................(((((.((((((((((.((((((.(((((((..((.(.(((.(((((((.(((((((..((((.(((.((..((.((((((.((........))...)))))).))..)).))).))))..))).)))).))))))).)))).))..))))))).)))))).)))))))))).)))))....

Structure

uuguagggauauauauc     A          G      U       cu  g u   a       a    -   ac    c   c  aa  c      --a  aaa 
                 gaggg GAGCUUCCUU AGUCCA UCagagg  gu a aug uccaauu guuu ccg  ucau cau ca  ua cgaguu   cu   u
                 ||||| |||||||||| |||||| |||||||  || | ||| ||||||| |||| |||  |||| ||| ||  || ||||||   ||    
                 cucUC CUCGAGGGAA UCAGGU gguuucu  ua u uac agguuaa caga ggc  agua gua gu  au gcucag   ga   u
-------------uucu     C          G      U       cu  g -   a       a    u   gu    a   a  aa  u      aua  auu 

Annotation confidence Not enough data

Genome context

chrA1: 7428122-7428320 [+]

Mature bra-miR319-5p

• Accession: MIMAT0035838
• Description: Brassica rapa bra-miR319-5p mature miRNA
• Sequence: 23 - AGAGCUUCCUUGAGUCCAUUC - 43
• Evidence: experimental ; Illumina [1]

Mature bra-miR319-3p

• Accession: MIMAT0035839
• Description: Brassica rapa bra-miR319-3p mature miRNA
• Sequence: 172 - UUGGACUGAAGGGAGCUCCCU - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146