Stem-loop bra-MIR390

Accession

MI0030559

Description

Brassica rapa bra-MIR390 precursor miRNA

Literature search

6 open access papers mention bra-MIR390
(12 sentences)

Sequence

guagagaagaaucuguaAAGCUCAGGAGGGAUAGCGCCaucaugaucacacacaucgauauuuuuggCGCUGUCCAUCCUGAGUUUCAuuggcucuucuuacuac
((((((((((.((.((.((((((((((.(((((((((((..(..(((.........)))..)..))))))))))).)))))))))).)).)).))))))..))))

Structure

    --      a  u  a          G           uc ug   aca 
guag  agaaga uc gu AAGCUCAGGA GGAUAGCGCCa  a  auc   c
||||  |||||| || || |||||||||| |||||||||||  |  |||   a
cauc  ucuucu gg uA UUUGAGUCCU CCUGUCGCggu  u  uag   c
    au      c  u  C          A           uu ua   cua 

Annotation confidence Not enough data

Genome context

chrA4: 16514660-16514764 [+]

Mature bra-miR390-5p

• Accession: MIMAT0035840
• Description: Brassica rapa bra-miR390-5p mature miRNA
• Sequence: 18 - AAGCUCAGGAGGGAUAGCGCC - 38
• Evidence: experimental ; Illumina [1]

Mature bra-miR390-3p

• Accession: MIMAT0035841
• Description: Brassica rapa bra-miR390-3p mature miRNA
• Sequence: 68 - CGCUGUCCAUCCUGAGUUUCA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146