Stem-loop bra-MIR395c

Accession

MI0030563

Description

Brassica rapa bra-MIR395c precursor miRNA

Literature search

6 open access papers mention bra-MIR395c
(14 sentences)

Sequence

gucggauguuuccuagaGUUCCUCUGAGCACUUCAUUGgauauaacauuuuuucuaucaaaauuaaauguauuccaCUGAAGUGUUUGGGGGAACUCcuggacucauucg
..((((((..(((..((((((((((((((((((((.((((....((((((..............))))))..)))).))))))))))))))))))))..)))..))))))

Structure

gu      uu   ua                    U    uaua      uuucua 
  cggaug  ucc  gaGUUCCUCUGAGCACUUCA UGga    acauuu      u
  ||||||  |||  |||||||||||||||||||| ||||    ||||||       
  gcuuac  agg  CUCAAGGGGGUUUGUGAAGU accu    uguaaa      c
--      uc   uc                    C    --ua      uuaaaa 

Annotation confidence Low

Genome context

chrA7: 18568920-18569029 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bra-MIR395c

Mature bra-miR395c-5p

• Accession: MIMAT0035848
• Description: Brassica rapa bra-miR395c-5p mature miRNA
• Sequence: 18 - GUUCCUCUGAGCACUUCAUUG - 38
• Evidence: experimental ; Illumina [1]

Mature bra-miR395c-3p

• Accession: MIMAT0035849
• Description: Brassica rapa bra-miR395c-3p mature miRNA
• Sequence: 77 - CUGAAGUGUUUGGGGGAACUC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146