Stem-loop bra-MIR860

Accession

MI0030569

Description

Brassica rapa bra-MIR860 precursor miRNA

Literature search

1 open access papers mention bra-MIR860
(1 sentences)

Sequence

uggucaaguguaauguAUGUAGUCCAAUCUAUUGAAGuacuagcacaccaucucuagugagaugaugugguugaguaguUCAAUACAUUGGACUACAUAUauuacuuuugaucaa
((((((((.(((((((((((((((((((.(((((((.((((..((((.((((((....)))))).))))....)))).))))))).))))))))))))))))))).)))))))).

Structure

-        u                   C       G    --ag    c      u 
 uggucaag guaauguAUGUAGUCCAAU UAUUGAA uacu    caca caucuc a
 |||||||| ||||||||||||||||||| ||||||| ||||    |||| ||||||  
 acuaguuu cauuaUAUACAUCAGGUUA AUAACUu auga    gugu guagag g
a        u                   C       g    guug    a      u 

Annotation confidence Not enough data

Genome context

chrA6: 17845504-17845618 [+]

Mature bra-miR860-5p

• Accession: MIMAT0035860
• Description: Brassica rapa bra-miR860-5p mature miRNA
• Sequence: 17 - AUGUAGUCCAAUCUAUUGAAG - 37
• Evidence: experimental ; Illumina [1]

Mature bra-miR860-3p

• Accession: MIMAT0035861
• Description: Brassica rapa bra-miR860-3p mature miRNA
• Sequence: 80 - UCAAUACAUUGGACUACAUAU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146