miRBase entry: bra-MIR172d

Stem-loop bra-MIR172d


Accession
MI0030577
Description
Brassica rapa bra-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
14 open access papers mention bra-MIR172d
(50 sentences)

Sequence

uaguugcagauGCAGCAUCAUUAAGAUUCACAagagaugugguuuucuuguuuucucgccucuugGGAAUCUUGAUGAUGCUGCAUcagcaacua
(((((((.(((((((((((((((((((((.((((((.((.((...........)).)).)))))).))))))))))))))))))))).)))))))

Structure
       a                     A      a  u  uuuu 
uaguugc gauGCAGCAUCAUUAAGAUUC CAagag ug gg    c
||||||| ||||||||||||||||||||| |||||| || ||    u
aucaacg cUACGUCGUAGUAGUUCUAAG guucuc gc cu    u
       a                     G      c  u  uuug 


Annotation confidence Not enough data
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Genome context
chrA3: 4762900-4762994 [-]

Database links

Mature bra-miR172d-5p

Accession MIMAT0035876
Description Brassica rapa bra-miR172d-5p mature miRNA
Sequence 12 - GCAGCAUCAUUAAGAUUCACA - 32
Evidence experimental
Illumina [1]

Mature bra-miR172d-3p

Accession MIMAT0035877
Description Brassica rapa bra-miR172d-3p mature miRNA
Sequence 66 - GGAAUCUUGAUGAUGCUGCAU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146