Stem-loop chi-let-7a

Accession

MI0030579

Description

Capra hircus chi-let-7a precursor miRNA

Literature search

17 open access papers mention chi-let-7a
(52 sentences)

Sequence

agacugacggcccuuuggggUGAGGUAGUAGGUUGUAUAGUUuggggcucugcccugcuaugggauaaCUAUACAAUCUACUGUCUUUCCugaaguggcuguaaua
......((((((((((((((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))))))))))).))))))....

Structure

agacug      -        U                     ---------      u 
      acggcc cuuugggg GAGGUAGUAGGUUGUAUAGUU         uggggc  
      |||||| |||||||| |||||||||||||||||||||         |||||| c
      ugucgg gaaguCCU UUCUGUCAUCUAACAUAUCaa         gucccg  
--auaa      u        -                     uaggguauc      u 

Annotation confidence Low

Genome context

chr5: 118521992-118522097 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-let-7a

Mature chi-let-7a-5p

• Accession: MIMAT0035880
• Description: Capra hircus chi-let-7a-5p mature miRNA
• Sequence: 21 - UGAGGUAGUAGGUUGUAUAGUU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-let-7a-3p

• Accession: MIMAT0035881
• Description: Capra hircus chi-let-7a-3p mature miRNA
• Sequence: 69 - CUAUACAAUCUACUGUCUUUCC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40