Stem-loop chi-let-7c

Accession

MI0030581

Description

Capra hircus chi-let-7c precursor miRNA

Literature search

16 open access papers mention chi-let-7c
(49 sentences)

Sequence

gaagcugugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcacacuugagccauc
...(((((((((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))))))...)))....

Structure

-gaa   ---      a      uU   G   U             ua  g ua  c 
    gcu   gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
    |||   |||||| ||||||  ||| ||| |||||||||||||  || |  || c
    cga   cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  gu  
cuac   guu      -      CU   G   U             --  g gg  c 

Annotation confidence Low

Genome context

chr1: 20809702-20809809 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-let-7c

Mature chi-let-7c-5p

• Accession: MIMAT0035884
• Description: Capra hircus chi-let-7c-5p mature miRNA
• Sequence: 21 - UGAGGUAGUAGGUUGUAUGGUU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-let-7c-3p

• Accession: MIMAT0035885
• Description: Capra hircus chi-let-7c-3p mature miRNA
• Sequence: 66 - CUGUACAACCUUCUAGCUUUCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40