Stem-loop chi-let-7c

Accession

MI0030581

Description

Capra hircus chi-let-7c precursor miRNA

Literature search

107 open access papers mention chi-let-7c
(350 sentences)

Sequence

661095 reads, 2015.0 reads per million, 36 experiments

gaagcugugugcauccggguUGAGGUAGUAGGUUGUAUGGUUUagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCUuggagcacacuugagccauc
...(((((((((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))))))...)))....

Structure

-gaa   ---      a      uU   G   U             Ua  g ua  c 
    gcu   gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
    |||   |||||| ||||||  ||| ||| |||||||||||||  || |  || c
    cga   cacacg agguUC  UUC AUC UCCAACAUGUCaa  uu a  gu  
cuac   guu      -      CU   G   U             --  g gg  c 

Annotation confidence High

Genome context

chr1: 20809702-20809809 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-let-7c

Mature chi-let-7c-5p

• Accession: MIMAT0035884
• Description: Capra hircus chi-let-7c-5p mature miRNA
• Sequence: 21 - UGAGGUAGUAGGUUGUAUGGUUU - 43
• Evidence: experimental ; Illumina [1]

Mature chi-let-7c-3p

• Accession: MIMAT0035885
• Description: Capra hircus chi-let-7c-3p mature miRNA
• Sequence: 66 - CUGUACAACCUUCUAGCUUUCCU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40