Stem-loop chi-let-7d

Accession

MI0030582

Description

Capra hircus chi-let-7d precursor miRNA

Literature search

69 open access papers mention chi-let-7d
(288 sentences)

Sequence

140140 reads, 430.0 reads per million, 36 experiments

aauggguuccuaggaAGAGGUAGUAGGUUGCAUAGUUUuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUUagggccuuauuau
((((((.((((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))).))))))..

Structure

--      u        A              C      -------Uua      g 
  aauggg uccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
  |||||| |||||||| |||||||||||||| ||||||          |||||| a
  uuauuc gggaUUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
ua      c        -              A      uggaggaaca      u 

Annotation confidence High

Genome context

chr8: 86753372-86753476 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-let-7d

Mature chi-let-7d-5p

• Accession: MIMAT0035886
• Description: Capra hircus chi-let-7d-5p mature miRNA
• Sequence: 16 - AGAGGUAGUAGGUUGCAUAGUUU - 38
• Evidence: experimental ; Illumina [1]

Mature chi-let-7d-3p

• Accession: MIMAT0035887
• Description: Capra hircus chi-let-7d-3p mature miRNA
• Sequence: 70 - CUAUACGACCUGCUGCCUUUCUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40