Stem-loop chi-let-7e

Accession

MI0030583

Description

Capra hircus chi-let-7e precursor miRNA

Literature search

13 open access papers mention chi-let-7e
(38 sentences)

Sequence

accugccgcgccccccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccaaggagaucaCUAUACGGCCUCCUAGCUUUCCccaggcugcgcccugcacggga
.(((((.((((..((.(((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))..))))...))).))..

Structure

-a  -   --c    cc  c   cU   G                U  -------  a g 
  cc ugc   gcgc  cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
  || |||   ||||  || |||  ||| |||||||||||||||| ||       || |  
  gg acg   cgcg  gg ccC  UUC AUCCUCCGGCAUAUCa cu       cc c c
ag  c   ucc    uc  a   CU   G                -  agaggaa  - a 

Annotation confidence Low

Genome context

chr18: 62075747-62075855 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-let-7e

Mature chi-let-7e-5p

• Accession: MIMAT0035888
• Description: Capra hircus chi-let-7e-5p mature miRNA
• Sequence: 21 - UGAGGUAGGAGGUUGUAUAGUU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-let-7e-3p

• Accession: MIMAT0035889
• Description: Capra hircus chi-let-7e-3p mature miRNA
• Sequence: 66 - CUAUACGGCCUCCUAGCUUUCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40