Stem-loop chi-let-7i

Accession

MI0030586

Description

Capra hircus chi-let-7i precursor miRNA

Literature search

70 open access papers mention chi-let-7i
(226 sentences)

Sequence

1813519 reads, 5544.0 reads per million, 36 experiments

cccgacaccauggcccuggcUGAGGUAGUAGUUUGUGCUGUUggucggguugugacauugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGCUagugcuggug
.....(((((..((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).)))))))

Structure

cccga     ug  c     U                 U   --------  u     ugu 
     cacca  gc cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
     |||||  || ||||| ||||||||||||||||| |||        || |||||   a
     guggu  cg gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
-----     --  u     -                 U   uagaggug  -     uua 

Annotation confidence High

Genome context

chr5: 52010869-52010976 [-]

Mature chi-let-7i-5p

• Accession: MIMAT0035894
• Description: Capra hircus chi-let-7i-5p mature miRNA
• Sequence: 21 - UGAGGUAGUAGUUUGUGCUGUU - 42
• Evidence: experimental ; Illumina [1]

Mature chi-let-7i-3p

• Accession: MIMAT0035895
• Description: Capra hircus chi-let-7i-3p mature miRNA
• Sequence: 77 - CUGCGCAAGCUACUGCCUUGCU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40