Stem-loop chi-mir-1

Accession

MI0030587

Description

Capra hircus chi-mir-1 precursor miRNA

Literature search

92 open access papers mention chi-mir-1
(485 sentences)

Sequence

1681815 reads, 4984.0 reads per million, 36 experiments

uaccugcuugggaaACAUACUUCUUUAUGUGCCCauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAuuucaggucgggaacucuc
..(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).))))))).)))).......

Structure

-----ua    -       a                GC     ---   a 
       ccug cuuggga ACAUACUUCUUUAUGU  CCaua   ugg c
       |||| ||||||| ||||||||||||||||  |||||   ||| c
       gggc ggacuuu UGUAUGAAGAAAUGUA  GGUau   auc u
cucucaa    u       A                -A     cga   g 

Annotation confidence High

Genome context

chr13: 55656779-55656871 [-]

Mature chi-miR-1-5p

• Accession: MIMAT0058931
• Description: Capra hircus chi-miR-1-5p mature miRNA
• Sequence: 15 - ACAUACUUCUUUAUGUGCCC - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1-3p

• Accession: MIMAT0035896
• Description: Capra hircus chi-miR-1-3p mature miRNA
• Sequence: 54 - UGGAAUGUAAAGAAGUAUGUA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40