Stem-loop chi-mir-105a

Accession

MI0030591

Description

Capra hircus chi-mir-105a precursor miRNA

Literature search

1 open access papers mention chi-mir-105a
(1 sentences)

Sequence

682 reads, 2.0 reads per million, 35 experiments

ugugcaucguagUCAAAUGCUCAGACUCCUGUGGuggcugcucaugcaCCACGGAUGUUUGAGCAUGUGCUacggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucguag CA AUGCUCAGAC  CUGUGGug    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcaUC GU UACGAGUUUG  GGCACCac    u
auc         -  G          UA        guac 

Annotation confidence High

Genome context

chrX: 56903737-56903817 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-105a

Mature chi-miR-105a-5p

• Accession: MIMAT0035903
• Description: Capra hircus chi-miR-105a-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGUGG - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-105a-3p

• Accession: MIMAT0058932
• Description: Capra hircus chi-miR-105a-3p mature miRNA
• Sequence: 49 - CCACGGAUGUUUGAGCAUGUGCU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40