miRBase entry: chi-mir-105b

Stem-loop chi-mir-105b

Accession

MI0030592

Description

Capra hircus chi-mir-105b precursor miRNA

Sequence

ugugcaucguggUCAAAUGCUCAGACUCCUUGGUGgcugcuuacgcaCCACGGAUGUUUGAGCAUGUGCuauggugucua
...(((((((((.((.(((((((((((((.(((((..........))))).))).)))))))))).)))))))))))...

Structure

ugu         U  A          -   U     gcug 
   gcaucgugg CA AUGCUCAGAC UCC UGGUG    c
   ||||||||| || |||||||||| ||| |||||     
   ugugguauC GU UACGAGUUUG AGG ACCac    u
auc         -  G          U   C     gcau

Annotation confidence Not enough data

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Genome context

chrX: 56905922-56906001 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-105b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-105b-5p

Accession	MIMAT0035904
Description	Capra hircus chi-miR-105b-5p mature miRNA
Sequence	13 - UCAAAUGCUCAGACUCCUUGGUG - 35
Evidence	experimental Illumina [1]

Mature chi-miR-105b-3p

Accession	MIMAT0035905
Description	Capra hircus chi-miR-105b-3p mature miRNA
Sequence	48 - CCACGGAUGUUUGAGCAUGUGC - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40