Stem-loop chi-mir-10a

Accession

MI0030596

Description

Capra hircus chi-mir-10a precursor miRNA

Literature search

5 open access papers mention chi-mir-10a
(7 sentences)

Sequence

aagaagaucugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaauuuugugaucaCAAAUUCGUAUCUAGGGGAAUauguaguugacauaaacacuccgcucauuuuuu
.((..((..(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))).))..))........

Structure

-------a  aa  uc   --c    uu        A    G     C          uaaggaa 
        ag  ga  ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUg       u
        ||  ||  |||   ||||  |||||||| |||| ||||| ||||||||||        
        uc  cu  aca   acag  gauguaUA GGGG AUCUA GCUUAAACac       u
uuuuuuac  gc  -c   aau    uu        A    -     U          uaguguu 

Annotation confidence Low

Genome context

chr19: 39033927-39034047 [+]

Mature chi-miR-10a-5p

• Accession: MIMAT0035911
• Description: Capra hircus chi-miR-10a-5p mature miRNA
• Sequence: 27 - UACCCUGUAGAUCCGAAUUUGU - 48
• Evidence: experimental ; Illumina [1]

Mature chi-miR-10a-3p

• Accession: MIMAT0035912
• Description: Capra hircus chi-miR-10a-3p mature miRNA
• Sequence: 68 - CAAAUUCGUAUCUAGGGGAAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40