Stem-loop chi-mir-1185

Accession

MI0030598

Description

Capra hircus chi-mir-1185 precursor miRNA

Literature search

1 open access papers mention chi-mir-1185
(6 sentences)

Sequence

2784 reads, 9.0 reads per million, 36 experiments

agcugcccuuugguacuugaagAGAGGAUACCCUUUGUAUGUUCacuuuauuaacggcgaAUAUACAGAGGGAGACUCUUAUUugcguaucaaacucugacugggaaggcgc
.(((.(((((((((((.(((((((((..(.((((((((((((((.((........)).)))))))))))))))..))))).)))).))))))))........)))..)))..

Structure

-a   -g   --------        u    -     GA A              a  uua 
  gcu  ccc        uuugguac ugaa gAGAG  U CCCUUUGUAUGUUC cu   u
  |||  |||        |||||||| |||| |||||  | |||||||||||||| ||    
  cgg  ggg        aaacuaug guUU UUCUC  A GGGAGACAUAUAag gg   u
cg   aa   ucagucuc        c    A     AG -              c  caa 

Annotation confidence High

Genome context

chr21: 67119939-67120050 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from chi-mir-1185

Mature chi-miR-1185-5p

• Accession: MIMAT0035915
• Description: Capra hircus chi-miR-1185-5p mature miRNA
• Sequence: 23 - AGAGGAUACCCUUUGUAUGUUC - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1185-3p

• Accession: MIMAT0035916
• Description: Capra hircus chi-miR-1185-3p mature miRNA
• Sequence: 61 - AUAUACAGAGGGAGACUCUUAUU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40