miRBase entry: chi-mir-1197

Stem-loop chi-mir-1197

Accession

MI0030599

Description

Capra hircus chi-mir-1197 precursor miRNA

Sequence

gaggcgaggucggcaucccuuccugguauuugaagacgcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgccuuggaagaccuucc
(((((((((..(...........(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))))..)))))))))((((....))))

Structure

------------         uc gcaucccuucc       -u     cgc   u       g   -g    - uuu 
            gaggcgagg  g           ugguauu  gaaga   ggu gaccaug ugu  uacg c   a
            |||||||||  |           |||||||  |||||   ||| ||||||| |||  |||| |   u
            uuccgcuuc  c           acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccuuccagaagg         ua -----------       cu     ---   U       -   GG    a uau

Annotation confidence Not enough data

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Genome context

chr21: 67103896-67104024 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-1197

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-1197-3p

Accession	MIMAT0035917
Description	Capra hircus chi-miR-1197-3p mature miRNA
Sequence	74 - UAGGACACAUGGUCUACUUCU - 94
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40