Stem-loop chi-mir-1197

Accession

MI0030599

Description

Capra hircus chi-mir-1197 precursor miRNA

Sequence

488 reads, 2.0 reads per million, 35 experiments

gaggcgaggucggcauCCCUUCCUGGUAUUUGAAGACGcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUUcucgauaucacaucuucgccuuggaagaccuucc
(((((((((..(...........(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))))..)))))))))((((....))))

Structure

------------         uc gcauCCCUUCC       -U     CGc   u       g   -g    - uuu 
            gaggcgagg  g           UGGUAUU  GAAGA   ggu gaccaug ugu  uacg c   a
            |||||||||  |           |||||||  |||||   ||| ||||||| |||  |||| |   u
            uuccgcuuc  c           acuauag  cUUCU   UCA CUGGUAC ACA  AUgc g   u
ccuuccagaagg         ua -----------       cu     ---   U       -   GG    a uau 

Annotation confidence Medium

Genome context

chr21: 67103896-67104024 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from chi-mir-1197

Mature chi-miR-1197-5p

• Accession: MIMAT0058934
• Description: Capra hircus chi-miR-1197-5p mature miRNA
• Sequence: 17 - CCCUUCCUGGUAUUUGAAGACG - 38
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1197-3p

• Accession: MIMAT0035917
• Description: Capra hircus chi-miR-1197-3p mature miRNA
• Sequence: 74 - UAGGACACAUGGUCUACUUCUU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40