Stem-loop chi-mir-125a

Accession

MI0030605

Description

Capra hircus chi-mir-125a precursor miRNA

Literature search

60 open access papers mention chi-mir-125a
(189 sentences)

Sequence

4642075 reads, 14378.0 reads per million, 36 experiments

cgUCCCUGAGACCCUUUAACCUGUgaggacguccagggucACAGGUGAGGUUCUUGGGAGCCUGGcguccggcc
..((((.((((.((((..((((((((...(.....)..)))))))))))).))))))))(((.((...))))).

Structure

-------------cg    U    C    UA        gga g 
               UCCC GAGA CCUU  ACCUGUga   c u
               |||| |||| ||||  ||||||||   | c
               AGGG UUCU GGAG  UGGACAcu   g c
ccggccugcGGUCCG    -    U    --        -gg a 

Annotation confidence Medium

Genome context

chr18: 62076263-62076336 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-125a

Mature chi-miR-125a-5p

• Accession: MIMAT0035923
• Description: Capra hircus chi-miR-125a-5p mature miRNA
• Sequence: 3 - UCCCUGAGACCCUUUAACCUGU - 24
• Evidence: experimental ; Illumina [1]

Mature chi-miR-125a-3p

• Accession: MIMAT0035924
• Description: Capra hircus chi-miR-125a-3p mature miRNA
• Sequence: 41 - ACAGGUGAGGUUCUUGGGAGCCUGG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40