Stem-loop chi-mir-126

Accession

MI0030607

Description

Capra hircus chi-mir-126 precursor miRNA

Literature search

99 open access papers mention chi-mir-126
(670 sentences)

Sequence

4788331 reads, 14542.0 reads per million, 36 experiments

gcuggugacgggaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGccgucagcag
.(((.((((((..(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..)))))).)))

Structure

g   g      ga           U       CGcug   c 
 cug ugacgg  CAUUAUUACUU UGGUACG     uga a
 ||| ||||||  ||||||||||| |||||||     |||  
 gac acugcc  GUAAUAAUGAG GCCAUGC     acu c
-   g      GC           U       -Ucaa   u 

Annotation confidence High

Genome context

chr11: 107845630-107845711 [+]

Mature chi-miR-126-5p

• Accession: MIMAT0035927
• Description: Capra hircus chi-miR-126-5p mature miRNA
• Sequence: 14 - CAUUAUUACUUUUGGUACGCG - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-126-3p

• Accession: MIMAT0035928
• Description: Capra hircus chi-miR-126-3p mature miRNA
• Sequence: 51 - UCGUACCGUGAGUAAUAAUGCG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40