Stem-loop chi-mir-127

Accession

MI0030608

Description

Capra hircus chi-mir-127 precursor miRNA

Literature search

27 open access papers mention chi-mir-127
(136 sentences)

Sequence

2183790 reads, 7069.0 reads per million, 36 experiments

cucgcuuugaucacugucuccagccugCUGAAGCUCAGAGGGCUCUGAUUcagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucggaagucuccucaucugcuuccuucggguu
((((....(((....))).((((((.....(((((((((.((.((((((((.....))..)))))).)).)))))))))))))))..((((((..........))))))..))))..

Structure

--    -----------cuuugaucacugucu      ugCUG         G  C      --  a 
  cucg                          ccagcc     AAGCUCAGA GG UCUGAU  Uc g
  ||||                          ||||||     ||||||||| || ||||||  || a
  gggc                          ggUCGG     UUCGAGUCU CC AGGCUa  ag a
uu    uuccuucgucuacuccucugaaggcu      -----         G  U      cu  a 

Annotation confidence High

Genome context

chr21: 66965394-66965510 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from chi-mir-127

Mature chi-miR-127-5p

• Accession: MIMAT0035929
• Description: Capra hircus chi-miR-127-5p mature miRNA
• Sequence: 28 - CUGAAGCUCAGAGGGCUCUGAUU - 50
• Evidence: experimental ; Illumina [1]

Mature chi-miR-127-3p

• Accession: MIMAT0035930
• Description: Capra hircus chi-miR-127-3p mature miRNA
• Sequence: 62 - UCGGAUCCGUCUGAGCUUGGCU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40