Stem-loop chi-mir-129

Accession

MI0030612

Description

Capra hircus chi-mir-129 precursor miRNA

Literature search

24 open access papers mention chi-mir-129
(155 sentences)

Sequence

916 reads, 3.0 reads per million, 36 experiments

aagccggcagacucugcccuucgcgaauCUUUUUGCGGUCUGGGCUUGCUGuacauaacucaauagccggAAGCCCUUACCCCAAAAAGCAUUcgcggagggcgcacu
..............(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))....

Structure

aagccggcagacuc              -       C   CU      ---     acau 
              ugcccuucgcgaau CUUUUUG GGU  GGGCUU   GCUGu    a
              |||||||||||||| ||||||| |||  ||||||   |||||     
              gcgggaggcgcUUA GAAAAAC CCA  CCCGAA   cgaua    a
----------ucac              C       C   UU      ggc     acuc 

Annotation confidence High

Genome context

chr15: 76204085-76204192 [+]

Mature chi-miR-129-5p

• Accession: MIMAT0035936
• Description: Capra hircus chi-miR-129-5p mature miRNA
• Sequence: 29 - CUUUUUGCGGUCUGGGCUUGCUG - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-129-3p

• Accession: MIMAT0035937
• Description: Capra hircus chi-miR-129-3p mature miRNA
• Sequence: 71 - AAGCCCUUACCCCAAAAAGCAUU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40