Stem-loop chi-mir-1307

Accession

MI0030615

Description

Capra hircus chi-mir-1307 precursor miRNA

Literature search

7 open access papers mention chi-mir-1307
(10 sentences)

Sequence

133493 reads, 413.0 reads per million, 36 experiments

caucaagagucggcugagucacugccacugccuaccaaucUCGACCGGACCUCGACCGGCUcgucuauguugccaaucgACUCGGCGUGGCGUCGGUCGUGGUagauagguggucauacagacgaguuuucgaguguugcuuuggugac
((((((((.((....)).))...((((((..((((((....(((((((.((.((.((((.(((..............))).)))))).))..)))))))))))))...))))))...(((..(((....)))..)))....))))))..

Structure

--      ----------gagucggcugagucacu      -gc      aucU       -A  U  A    C   ucuaug 
  caucaa                           gccacu   cuacca    CGACCGG  CC CG CCGG Ucg      u
  ||||||                           ||||||   ||||||    |||||||  || || |||| |||       
  gugguu                           uggugg   gaUGGU    GCUGGCU  GG GC GGCU Agc      u
ca      ucguugugagcuuuugagcagacauac      aua      ----       GC  U  -    C   uaaccg 

Annotation confidence High

Genome context

chr26: 23857628-23857776 [-]

Mature chi-miR-1307-5p

• Accession: MIMAT0035941
• Description: Capra hircus chi-miR-1307-5p mature miRNA
• Sequence: 41 - UCGACCGGACCUCGACCGGCU - 61
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1307-3p

• Accession: MIMAT0035942
• Description: Capra hircus chi-miR-1307-3p mature miRNA
• Sequence: 80 - ACUCGGCGUGGCGUCGGUCGUGGU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40