Stem-loop chi-mir-130b

Accession

MI0030617

Description

Capra hircus chi-mir-130b precursor miRNA

Literature search

2 open access papers mention chi-mir-130b
(84 sentences)

Sequence

ggccugccugacACUCUUUCCCUGUUGCACUACUgugcgccccuggcaagCAGUGCAAUGAUGAAAGGGCAUcggucgggcc
((((((.((((..(((((((..(((((((((.((.(((.......))))).)))))))))..)))))))..)))).))))))

Structure

      c    cA       CC         A  g   gc 
ggccug cuga  CUCUUUC  UGUUGCACU CU ugc  c
|||||| ||||  |||||||  ||||||||| || |||  c
ccgggc ggcU  GGGAAAG  GUAACGUGA ga acg  c
      u    AC       UA         C  -   gu 

Annotation confidence Low

Genome context

AJPT02103319.1: 195466-195547 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-130b

Mature chi-miR-130b-5p

• Accession: MIMAT0035945
• Description: Capra hircus chi-miR-130b-5p mature miRNA
• Sequence: 13 - ACUCUUUCCCUGUUGCACUACU - 34
• Evidence: experimental ; Illumina [1]

Mature chi-miR-130b-3p

• Accession: MIMAT0035946
• Description: Capra hircus chi-miR-130b-3p mature miRNA
• Sequence: 51 - CAGUGCAAUGAUGAAAGGGCAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40