Stem-loop chi-mir-133b

Accession

MI0030619

Description

Capra hircus chi-mir-133b precursor miRNA

Literature search

46 open access papers mention chi-mir-133b
(292 sentences)

Sequence

19307674 reads, 58818.0 reads per million, 36 experiments

ugcccccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUacagcagggcuggcaaagcccaguccuuggaga
.....(((.(((.((..((....(((((......))))))).)).)))))).........(((((....((....))((((((((......))))))))))))).

Structure

ugcccccugcucuggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCC     ------------------ACCA  U 
                                                            CUUCA                      GC a
                                                            |||||                      ||  
                                                            gaggu                      cg c
-----------------------------------------------------------a     uccugacccgaaacggucggga  a 

Annotation confidence Not enough data

Genome context

chr23: 25419918-25420022 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-133b

Mature chi-miR-133b-5p

• Accession: MIMAT0035949
• Description: Capra hircus chi-miR-133b-5p mature miRNA
• Sequence: 52 - UUUGGUCCCCUUCAACCAGCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40