Stem-loop chi-mir-1343

Accession

MI0030620

Description

Capra hircus chi-mir-1343 precursor miRNA

Literature search

4 open access papers mention chi-mir-1343
(11 sentences)

Sequence

10394 reads, 31.0 reads per million, 36 experiments

ugcuggcuucggugcUGGGGAGCGGCCCCCGGGCGGGccucugcucuggcccCUCCUGGGGCCCGCACUCUCGCuccgggc
.....(((.(((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).))))))

Structure

ugcug   u   u  U    A    C       -C     ucu 
     gcu cgg gc GGGG GCGG CCCCGGG  GGGcc   g
     ||| ||| || |||| |||| |||||||  |||||    
     cgg gcc CG UCUC CGCC GGGGUCC  cccgg   c
-----   -   u  C    A    C       UC     ucu 

Annotation confidence High

Genome context

chr15: 68128730-68128810 [+]

Mature chi-miR-1343-5p

• Accession: MIMAT0058938
• Description: Capra hircus chi-miR-1343-5p mature miRNA
• Sequence: 16 - UGGGGAGCGGCCCCCGGGCGGG - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1343-3p

• Accession: MIMAT0035950
• Description: Capra hircus chi-miR-1343-3p mature miRNA
• Sequence: 53 - CUCCUGGGGCCCGCACUCUCGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40